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定量合成生物学视角下的细菌肿瘤疗法

Bacterial Cancer Therapy in the Light of Quantitative Synthetic Biology

  • 摘要: 细菌肿瘤疗法已有近160年的研究历史,尽管多个抗肿瘤合成活菌药物(指经遗传工程改造的活菌)已进入临床试验阶段,但迄今尚无产品获批上市。深入理解这一研发困境的成因是实现该领域临床突破的关键前提。本文系统梳理了合成细菌肿瘤疗法在底盘菌株选择、基因线路设计及给药途径等3个核心环节的研究进展与现存挑战,进而指出当前范式的主要局限在于对合成细菌体内行为的定量观测与解析能力不足,从而制约了对其动态功能的精准设计与有效调控。结合近期针对工程化沙门氏菌(一种代表性底盘菌)体内抗肿瘤免疫机制的定量研究,本文提出以定量合成生物学为核心的实体瘤治疗研究新范式:即运用多层次定量工具系统表征合成细菌与肿瘤微环境及宿主免疫系统之间的互作动态,借助数理建模将观测数据转化为具备预测能力的机制性认识,并以此指导下一代合成细菌的理性设计,形成“构建-测量-建模-设计”的迭代闭环,推动合成细菌肿瘤疗法从经验性试错向可预测的理性工程范式转变。

     

    Abstract: Although bacterial cancer therapy dates back nearly 160 years, and several synthetic live bacterial therapeutics engineered with genetic circuits have entered clinical trials, none has yet obtained regulatory approval. Identifying the barriers to such clinical translation is a prerequisite for breakthroughs in this field. Here we review the current state and remaining challenges across three core aspects, chassis strain selection, genetic circuit design, and administration routes, and highlight that the prevailing paradigm is critically limited by insufficient quantitative analysis of the in vivo behavior of these agents, which constrains precise design and effective control over their dynamic functions. Informed by recent quantitative studies on the antitumor immune mechanisms of engineered Salmonella (a representative chassis organism), we propose a new research framework for solid tumor therapy rooted in quantitative synthetic biology. This framework uses multi-scale quantitative tools to systematically characterize the dynamic interplay among synthetic bacteria, the tumor microenvironment, and the host immune system, and employs mathematical modeling to translate experimental observations into mechanistically predictive insights. These insights, in turn, guide the rational design of next-generation bacterial therapeutics, forming an iterative “build-measure-model-design” loop. Ultimately, this approach aims to shift the development of bacterial tumor therapy from empirical trial-and-error toward predictable, rational engineering.

     

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